PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family DBB
Protein Properties Length: 291aa    MW: 31764.4 Da    PI: 4.9265
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.32.1e-05447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC +C ++ H        H+++pl
  XP_004488990.1  4 QCNVCEAAEAKVLCCADEAALCCECDEKVHAAnklagkHQRIPL 47
                    7******99*********************66889999998886 PP

2zf-B_box27.85.4e-095494337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    ++kC+ ++e    +fC +++ llC++C l++H        H
  XP_004488990.1 54 MPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTAnayvsdH 94
                    799*******9*********************545566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.424147IPR000315B-box-type zinc finger
CDDcd000213.43E-7347No hitNo description
SMARTSM003361.5E-8447IPR000315B-box-type zinc finger
SMARTSM003361.0E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3575299IPR000315B-box-type zinc finger
PfamPF006431.8E-65494IPR000315B-box-type zinc finger
CDDcd000212.19E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCCECDE KVHAANKLAG KHQRIPLSTS SSHMPKCDIC  60
QEAFGYFFCL EDRALLCRKC DLAIHTANAY VSDHQRFLLT GVKVGLETTE PGASSKSDSV  120
EKVSDTKSSS VSRKISTMPQ SSGYNEIQML PTEAAGAGEF PPAKVSYGGG STDGNMSQWT  180
IDEFFGVNDF SQSYNYMDGS SRADSGKLDD SDSPVLRSGL EEMEDGDYLG RVPDSSWTVP  240
QIPSPPTASG LYWPKNPRYS TDNALFVPDI EISCMQHLQN SSSFSRSRKH R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488990.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-93BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A072VAB51e-172A0A072VAB5_MEDTR; B-box type zinc finger protein
STRINGGLYMA13G33987.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-78light-regulated zinc finger protein 1